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A dynamic model of lignin biosynthesis in Brachypodium distachyon.

Identifieur interne : 001082 ( Main/Exploration ); précédent : 001081; suivant : 001083

A dynamic model of lignin biosynthesis in Brachypodium distachyon.

Auteurs : Mojdeh Faraji [États-Unis] ; Luis L. Fonseca [États-Unis] ; Luis Escamilla-Trevi O [États-Unis] ; Jaime Barros-Rios [États-Unis] ; Nancy L. Engle [États-Unis] ; Zamin K. Yang [États-Unis] ; Timothy J. Tschaplinski [États-Unis] ; Richard A. Dixon [États-Unis] ; Eberhard O. Voit [États-Unis]

Source :

RBID : pubmed:30250505

Abstract

Background

Lignin is a crucial molecule for terrestrial plants, as it offers structural support and permits the transport of water over long distances. The hardness of lignin reduces plant digestibility by cattle and sheep; it also makes inedible plant materials recalcitrant toward the enzymatic fermentation of cellulose, which is a potentially valuable substrate for sustainable biofuels. Targeted attempts to change the amount or composition of lignin in relevant plant species have been hampered by the fact that the lignin biosynthetic pathway is difficult to understand, because it uses several enzymes for the same substrates, is regulated in an ill-characterized manner, may operate in different locations within cells, and contains metabolic channels, which the plant may use to funnel initial substrates into specific monolignols.

Results

We propose a dynamic mathematical model that integrates various datasets and other information regarding the lignin pathway in

Conclusion

Given the present scarcity of available data, the model resulting from our analysis is presumably not final. However, it offers proof of concept for how one may design integrative pathway models of this type, which are necessary tools for predicting the consequences of genomic or other alterations toward plants with lignin features that are more desirable than in their wild-type counterparts.


DOI: 10.1186/s13068-018-1241-6
PubMed: 30250505
PubMed Central: PMC6145374


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<p>
<b>Background</b>
</p>
<p>Lignin is a crucial molecule for terrestrial plants, as it offers structural support and permits the transport of water over long distances. The hardness of lignin reduces plant digestibility by cattle and sheep; it also makes inedible plant materials recalcitrant toward the enzymatic fermentation of cellulose, which is a potentially valuable substrate for sustainable biofuels. Targeted attempts to change the amount or composition of lignin in relevant plant species have been hampered by the fact that the lignin biosynthetic pathway is difficult to understand, because it uses several enzymes for the same substrates, is regulated in an ill-characterized manner, may operate in different locations within cells, and contains metabolic channels, which the plant may use to funnel initial substrates into specific monolignols.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>Results</b>
</p>
<p>We propose a dynamic mathematical model that integrates various datasets and other information regarding the lignin pathway in </p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>Conclusion</b>
</p>
<p>Given the present scarcity of available data, the model resulting from our analysis is presumably not final. However, it offers proof of concept for how one may design integrative pathway models of this type, which are necessary tools for predicting the consequences of genomic or other alterations toward plants with lignin features that are more desirable than in their wild-type counterparts.</p>
</div>
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<Abstract>
<AbstractText Label="Background" NlmCategory="UNASSIGNED">Lignin is a crucial molecule for terrestrial plants, as it offers structural support and permits the transport of water over long distances. The hardness of lignin reduces plant digestibility by cattle and sheep; it also makes inedible plant materials recalcitrant toward the enzymatic fermentation of cellulose, which is a potentially valuable substrate for sustainable biofuels. Targeted attempts to change the amount or composition of lignin in relevant plant species have been hampered by the fact that the lignin biosynthetic pathway is difficult to understand, because it uses several enzymes for the same substrates, is regulated in an ill-characterized manner, may operate in different locations within cells, and contains metabolic channels, which the plant may use to funnel initial substrates into specific monolignols.</AbstractText>
<AbstractText Label="Results" NlmCategory="UNASSIGNED">We propose a dynamic mathematical model that integrates various datasets and other information regarding the lignin pathway in
<i>Brachypodium distachyon</i>
and permits explanations for some counterintuitive observations. The model predicts the lignin composition and label distribution in a
<i>BdPTAL</i>
knockdown strain, with results that are quite similar to experimental data.</AbstractText>
<AbstractText Label="Conclusion" NlmCategory="UNASSIGNED">Given the present scarcity of available data, the model resulting from our analysis is presumably not final. However, it offers proof of concept for how one may design integrative pathway models of this type, which are necessary tools for predicting the consequences of genomic or other alterations toward plants with lignin features that are more desirable than in their wild-type counterparts.</AbstractText>
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<Affiliation>1The Wallace H. Coulter, Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, 950 Atlantic Drive, Atlanta, GA 30332-2000 USA.</Affiliation>
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